BIOL 708L/ NACS 728B
Quantitative Analysis of Biological Data

Fall 2011
Updated 08/31/2011

Course Information

Lecture Tu & Th 3:30 - 4:45, BPS 1234
Lab M 3:00 - 5:00, CSS 1410.
Description & Prerequisites http://terpconnect.umd.edu/~jzsimon/biol708L/description
Required Text Edward Batschelet, Introduction to Mathematics for Life Scientists, Springer-Verlag, 1979, ISBN 978-3-540-09648-1.
Recommended  Stormy Attaway Matlab: A Practical Introduction to Programming and Problem Solving, Elsevier, 2011, ISBN 9780123850812.
Web Site http://terpconnect.umd.edu/~jzsimon/biol708L/
Testudo Info BIOL 708L/NACS 728B

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Instructor Info

Jonathan Z. Simon, Professor
ECE Office AVW 2209
ECE Phone 301-405-3645
Bio Office BPS 3227
Bio Phone 301-405-6812
Email jzsimon@umd.edu
WWW http://www.isr.umd.edu/Labs/CSSL/simonlab

Office Hours

  Day Time Location
  Wed 10:00 - 12:00 (Tentative) BPS 3227

Outline

Introduction & Mathematical Review
Basic Matlab
Smoothing & Detrending: Data Filtering
Frequency & Fourier Transforms
Improving Signal to Noise Ratio
Choosing and Designing Filters
Spectrograms & Time-Frequency Analysis
Computational Statistics: Bootstrap, Permutation Tests
Power Spectral Density
Principal Component Analysis (PCA)
Statistics for Circular or Periodic Data (if time allows)
Hands-on Data Analysis (BYOD)

Using MATLAB around UMCP

There are many computers around campus with Matlab installed. The campus OIT web system can tell you which open labs have Matlab here. (For the purposes of this course, it should not matter which version of Matlab is installed.) In the past, some of the better equipped labs have been Parking Garage II Rm 0504 (lab 37), Computer and Space Sciences Building Rm 3330 (lab 32), Computer and Space Sciences Building Rm 3332 (lab 33), Martin Hall (Engineering) Rm 0309 (lab 23), and 0312 (lab 25) .

Using MATLAB in your lab and at home

Ideally, you should convince your research advisor to install Matlab on at least one computer in your lab.  :) 

Additionally, if you want to buy the (fully functional) student version of Matlab, it is $99 at most academic bookstores (though for some reason it's sometimes more at the campus bookstore). This price includes several of the most useful toolboxes, including the Signal Processing toolbox. This price is extremely inexpensive compared to the full-priced version.

CourseEvalUM Fall 2011

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Other Interesting Sites

Johns Hopkins University Signals Systems Controls: Demonstrations: http://www.jhu.edu/~signals/
Matlab Help Desk
Interactive MATLAB Tutorial
 

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